DNA Damage Atlas


GSM2769603-5F_HEK293T_PD_1




Basic Information

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Sample ID:   

SRR5998404


Source Project ID:   

GSE99011

Cell Type:   

293T


Organism:   

Homo sapiens


Strain:   

CRL-3216


Treatment:   

5-fluorodeoxyuridine


Treatment Time:   

48hrs


Treatment Dose:   

5uM


Genotype:   

WT


Harvested Time:   

time point: after 48 h of treatment


Spike-in percentage:   

2 μg DNA fragments + 15 pg spike_in sequences


Layout:   

PAIRED


Instrument model:   

HiSeq X Ten


Technique:   

dU-seq


Others:   

control:GSM2769599-5F_HEK293T_input_1


Fastqc:  




Genome Browser

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  link to genome browser visualization (rDNA locus is firstly shown for human and mouse samples)




Quantification

Manual

Peak Intensity Top 10 Peaks
Chromosome Start End Summit Intensity Strand
chr9_gl000199_random91319920879187722.0941/
chrUn_gl00021412890812941112909215.8428/
chr19_gl000208_random89422899318974715.656/
chr9_gl000199_random92553929369277012.9144/
chr19_gl000208_random9025591969906358.89781/
chr9_gl000199_random8276783343829518.34866/
chr19_gl000208_random8820088833886634.99224/
chr136258181062583293625822944.81763/
chr161197036119744011972544.76121/
chr136591717265917618659174404.62091/
Download the Full Peak List



Overlapped Peaks from Replicates




Average Peak Intensity Top 10 Merged Peaks
Chromosome Start End Summit Intensity Strand
chr9_gl000199_random91319920879187722.0941/
chr136265376462654587626544014.75791/
chr136509655265097221650968614.62091/
chr136591717265917618659174404.62091/
chr17444801674448215744480634.48778/
chr18838204088382280883820584.29359/
chr136815260668153209681529964.21527/
chr98216608682167101821670964.1963/
chr136384447863845363638449624.19171/
chr136381027263811339638107014.18495/
Download the Full Merged Peak List



Motif Analysis

Manual





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