DNA Damage Atlas


GSM2769608-5F_UNGKO_control_2




Basic Information

Manual

Sample ID:   

SRR5998409


Source Project ID:   

GSE99011

Cell Type:   

293T


Organism:   

Homo sapiens


Strain:   

CRL-3216


Treatment:   

5-fluorodeoxyuridine


Treatment Time:   

48hrs


Treatment Dose:   

5uM


Genotype:   

UNG-/-


Harvested Time:   

time point: after 48 h of treatment


Spike-in percentage:   

2 μg DNA fragments + 15 pg spike_in sequences


Layout:   

PAIRED


Instrument model:   

HiSeq X Ten


Technique:   

dU-seq


Others:   

control:GSM2769606-5F_UNGKO_input_2


Fastqc:  




Genome Browser

Manual

  link to genome browser visualization (rDNA locus is firstly shown for human and mouse samples)




Quantification

Manual

Peak Intensity Top 10 Peaks
Chromosome Start End Summit Intensity Strand
rDNA28067288172855562.7539/
rDNA23167237932356940.5372/
rDNA31128325713190339.3801/
rDNA41469423984218621.7125/
chr9_gl000199_random82868831168299115.7421/
chrUn_gl00022012718312755912737014.421/
chrUn_gl00022013661813703913685713.9099/
rDNA24320249812477213.125/
rDNA22582229772277812.08/
chrUn_gl00022012890612966012933210.6432/
Download the Full Peak List



Overlapped Peaks from Replicates




Average Peak Intensity Top 10 Merged Peaks
Chromosome Start End Summit Intensity Strand
rDNA28067287912855565.0075/
rDNA23233237912356945.4772/
rDNA31128325713190339.3801/
rDNA41469423984218621.7125/
chrUn_gl00022012718312755512737014.576/
chrUn_gl00022013661813703913685713.9099/
rDNA22604229522277813.7115/
rDNA24320249612477213.5346/
chrUn_gl00022012894012966012933211.1458/
chrUn_gl00022013262113315013280810.6601/
Download the Full Merged Peak List



Motif Analysis

Manual





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