DNA Damage Atlas


GSM2769609-5F_UNGKO_PD_1




Basic Information

Manual

Sample ID:   

SRR5998410


Source Project ID:   

GSE99011

Cell Type:   

293T


Organism:   

Homo sapiens


Strain:   

CRL-3216


Treatment:   

5-fluorodeoxyuridine


Treatment Time:   

48hrs


Treatment Dose:   

5uM


Genotype:   

UNG-/-


Harvested Time:   

time point: after 48 h of treatment


Spike-in percentage:   

2 μg DNA fragments + 15 pg spike_in sequences


Layout:   

PAIRED


Instrument model:   

HiSeq X Ten


Technique:   

dU-seq


Others:   

control:GSM2769605-5F_UNGKO_input_1


Fastqc:  




Genome Browser

Manual

  link to genome browser visualization (rDNA locus is firstly shown for human and mouse samples)




Quantification

Manual

Peak Intensity Top 10 Peaks
Chromosome Start End Summit Intensity Strand
chrUn_gl00022014266314378914293124.9371/
rDNA36578370893683213.0033/
rDNA1901419509192607.93871/
rDNA3551835997357567.01059/
chrUn_gl0002201288441303191299686.39402/
chr177976734579773885797720965.68091/
chr177975893779767224797659355.18167/
chr177949959679502390795006574.80755/
chr177991366479928048799255554.545/
chr91399037261399128811399112204.5343/
Download the Full Peak List



Overlapped Peaks from Replicates




Average Peak Intensity Top 10 Merged Peaks
Chromosome Start End Summit Intensity Strand
chrUn_gl00022014269714334814293142.3642/
rDNA1904019470192609.13874/
rDNA3556335956357568.54471/
chrUn_gl0002201288681302791299686.68404/
chr177976734579773824797720965.7344/
chr177975901879767224797659355.23281/
chr177985583779869373798671045.09101/
chr163045303304798430467285.03683/
chr177992328979926385799255554.91554/
chr177950922979516117795123704.896/
Download the Full Merged Peak List



Motif Analysis

Manual





Copyright © 2023 All Rights Reserved by Wu lab