DNA Damage Atlas

GSM2772315-No_UV

Basic Information Genome Browser Distribution Quantification Visualization Motif Analysis


Basic Information

Manual

Sample ID:   

SRR6006619


Source Project ID:   

GSE103487

Cell Type:   

NHF1


Organism:   

Homo sapiens


Treatment:   

NT


Harvested Time:   

repair time: None


Layout:   

SINGLE


Instrument model:   

Ion Torrent Proton


Technique:   

CPD-seq


Fastqc:  



Genome Browser

Manual

  link to genome browser visualization (rDNA locus is firstly shown for human and mouse samples)



Distribution

Manual




Genomic distribution Repeat distribution Top 10 simple repeats


Quantification

Manual

Peak Intensity Top 10 Peaks
Chromosome Start End Summit Intensity Strand
rDNA13746145571374612.9354+
chr1262231952622326056223203311.4751+
chr538449096384497013844920311.147+
chr821690013216904852169048411.1129-
rDNA28550289562855011.0738+
chr111675210011675259911675222410.5116+
chr1831208694312092933120903410.0077-
chr71367821413678665136782149.96887+
chr12030596692030602782030600219.84337-
chr194981176949812457498122099.80224-
Download the Full Peak List


Visualization

Manual



Motif Analysis

Manual





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