DNA Damage Atlas

GSM2772318-NHF1_UV_0hr_Replicate_2

Basic Information Genome Browser Distribution Quantification Visualization Motif Analysis


Basic Information

Manual

Sample ID:   

SRR6006622


Source Project ID:   

GSE103487

Cell Type:   

NHF1


Organism:   

Homo sapiens


Treatment:   

UV


Treatment Dose:   

100 J/m2


Harvested Time:   

repair time: 0 hr


Layout:   

SINGLE


Instrument model:   

Ion Torrent Proton


Technique:   

CPD-seq


Fastqc:  



Genome Browser

Manual

  link to genome browser visualization (rDNA locus is firstly shown for human and mouse samples)



Distribution

Manual




Genomic distribution Repeat distribution Top 10 simple repeats


Quantification

Manual

Peak Intensity Top 10 Peaks
Chromosome Start End Summit Intensity Strand
chrM269143863031193.307-
chrM9264482118.515-
rDNA14009141511401452.479+
rDNA28493287562856447.8148+
rDNA38553386793861435.1162+
rDNA31943320933199627.9451+
chrUn_gl00022423222436234626.556+
rDNA23625237792363924.1949+
chr1227964035279641332796403723.7628+
chr2045081925450819954508198723.2876-
Download the Full Peak List


Overlapped Peaks from Replicates




Average Peak Intensity Top 10 Merged Peaks
Chromosome Start End Summit Intensity Strand
rDNA14009141511401435.3952+
rDNA28493287562856425.8895+
rDNA23625237792363912.9024+
rDNA1420914376142099.8002+
chrUn_gl0002207990780083799074.67531+
Download the Full Merged Peak List


Visualization

Manual



Motif Analysis

Manual





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