DNA Damage Atlas

GSM2772319-Naked_DNA_UV_Replicate_2

Basic Information Genome Browser Distribution Quantification Visualization Motif Analysis


Basic Information

Manual

Sample ID:   

SRR6006623


Source Project ID:   

GSE103487

Cell Type:   

NHF1


Organism:   

Homo sapiens


Treatment:   

UV


Treatment Dose:   

80 J/m2


Harvested Time:   

repair time: None


Layout:   

SINGLE


Instrument model:   

Ion Torrent Proton


Technique:   

CPD-seq


Fastqc:  



Genome Browser

Manual

  link to genome browser visualization (rDNA locus is firstly shown for human and mouse samples)



Distribution

Manual




Genomic distribution Repeat distribution Top 10 simple repeats


Quantification

Manual

Peak Intensity Top 10 Peaks
Chromosome Start End Summit Intensity Strand
chrM1445813800138.715+
rDNA38558387263855819.0243+
rDNA13482145791381617.689+
rDNA38284385023841614.6609-
chr1655365854553660265536585414.6+
rDNA28518288022853614.4692+
chr1771510489715107127151070613.3085-
chr633973772339739973397388713.1902+
chr1410329151710329172710329158813.0452+
chr1934452863445511344530612.1756+
Download the Full Peak List


Overlapped Peaks from Replicates




Average Peak Intensity Top 10 Merged Peaks
Chromosome Start End Summit Intensity Strand
rDNA38558387263855818.6818+
rDNA28518288022853616.5011+
rDNA38284385023841614.9858-
rDNA13518145791381614.3474+
chrUn_gl0002209623297167967889.29204+
rDNA3195032272319958.44001+
chr164197393419756341974538.09828+
rDNA4201242369420437.7525+
chr163110575631105984311059847.69684-
rDNA4008140416403247.64433-
Download the Full Merged Peak List


Visualization

Manual



Motif Analysis

Manual





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