DNA Damage Atlas


GSM2772323-NHF1_UV_0hr_20J_part_B




Basic Information

Manual

Sample ID:   

SRR6006627


Source Project ID:   

GSE103487

Cell Type:   

NHF1


Organism:   

Homo sapiens


Treatment:   

UV


Treatment Dose:   

20 J/m2


Harvested Time:   

repair time: 0 hr


Layout:   

SINGLE


Instrument model:   

Ion Torrent Proton


Technique:   

CPD-seq


Fastqc:  




Genome Browser

Manual

  link to genome browser visualization (rDNA locus is firstly shown for human and mouse samples)




Quantification

Manual

Peak Intensity Top 10 Peaks
Chromosome Start End Summit Intensity Strand
rDNA28334295782862310.0511+
rDNA1314314941140737.3799+
rDNA4202842541420296.46641+
rDNA3789639111385586.09058+
rDNA1506230319515.44286+
chrUn_gl0002209598397758965494.60033+
chr41966895019669748196689504.47674+
chr11623817081623825331623820384.33023-
chr41471891201471896541471896544.30069-
chr111287714801287725151287721414.19127+
Download the Full Peak List



Motif Analysis

Manual





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