DNA Damage Atlas


GSM2776466-Fibroblast_KOH




Basic Information

Manual

Sample ID:   

SRR6015248


Source Project ID:   

GSE103612

Cell Type:   

Fibroblast cell


Organism:   

Homo sapiens


Treatment:   

KOH


Treatment Time:   

2hrs


Treatment Dose:   

0.3 M


Genotype:   

WT


Layout:   

PAIRED


Instrument model:   

NextSeq 500


Technique:   

HydEn-seq


Fastqc:  




Genome Browser

Manual

  link to genome browser visualization (rDNA locus is firstly shown for human and mouse samples)




Quantification

Manual

Peak Intensity Top 10 Peaks
Chromosome Start End Summit Intensity Strand
rDNA42899438504298842.7651+
chrUn_gl00022010355010441210389939.7685+
chr1667897344678975536789735038.8007+
chrUn_gl00022014731314821714752626.9116+
chrUn_gl00022411535596385923.0362-
chrUn_gl00021412867312995012907820.0131-
chrUn_gl0002249162122741133117.3722-
chrUn_gl00021680009816928063815.8423+
rDNA56226168587515.7524-
chrX14936254214936274214936274214.1299-
Download the Full Peak List



Motif Analysis

Manual





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