DNA Damage Atlas

GSM2776859-Tus_BRCA1del_siBRCA1_Rep1

Basic Information Genome Browser Distribution Quantification Visualization Motif Analysis


Basic Information

Manual

Sample ID:   

SRR6019606


Source Project ID:   

GSE103624

Cell Type:   

mESC


Organism:   

Mus musculus


Treatment:   

48 hour culture post transfection; siRNA: BRCA1


Genotype:   

Brca1Δ/exon11


Targeted break:   

Cas9/US30kb_ROSA26 gRNA


Layout:   

PAIRED


Instrument model:   

Illumina MiSeq


Technique:   

LAM-HTGTS


Fastqc:  



Genome Browser

Manual

  link to genome browser visualization (rDNA locus is firstly shown for human and mouse samples)



Distribution

Manual




Genomic distribution Repeat distribution Top 10 simple repeats


Quantification

Manual

Peak Intensity Top 10 Peaks
Chromosome Start End Summit Intensity Strand
chr61130266731130278921130269204626.28-
chr61158046711158048761158048762218.5-
chr5137933305137933507137933305900.581+
chr6113792690113792892113792890900.581-
chr6850845985086618508459900.581+
chr8749895574991577499155900.581-
chrX428110174281121942811017900.581+
chr10192278301922803319228030896.145-
chr11973313769733157997331576896.145-
chr6103383537103383740103383737896.145-
Download the Full Peak List


Visualization

Manual



Motif Analysis

Manual





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