DNA Damage Atlas


GSM2776870-Tus_BRCA1flox_siBRCA1_Rep1




Basic Information

Manual

Sample ID:   

SRR6019617


Source Project ID:   

GSE103624

Cell Type:   

mESC


Organism:   

Mus musculus


Treatment:   

48 hour culture post transfection; siRNA: BRCA1


Genotype:   

Brca1f1/exon11


Targeted break:   

Cas9/US30kb_ROSA26 gRNA


Layout:   

PAIRED


Instrument model:   

Illumina MiSeq


Technique:   

LAM-HTGTS


Fastqc:  




Genome Browser

Manual

  link to genome browser visualization (rDNA locus is firstly shown for human and mouse samples)




Quantification

Manual

Peak Intensity Top 10 Peaks
Chromosome Start End Summit Intensity Strand
chr61130253981130296731130269283213.96-
chrX1061866331061872321061868331415.91-
chr68877515788775359887753571119.64-
chr1153478688153478891153478688835.595+
chr6124730347124730550124730350835.595+
chr1593847065938490759384706562.606+
chr17175230751752327617523075562.606+
chr15886625428866274488662542559.821+
Download the Full Peak List



Motif Analysis

Manual





Copyright © 2023 All Rights Reserved by Wu lab