DNA Damage Atlas

GSM2808031-K562_A1_gH2Ax

Basic Information Genome Browser Distribution Quantification Visualization Motif Analysis


Basic Information

Manual

Sample ID:   

SRR6156986


Source Project ID:   

GSE104800

Cell Type:   

K562


Organism:   

Homo sapiens


Treatment:   

Aphidicolin


Layout:   

SINGLE


Instrument model:   

NextSeq 500


Technique:   

ChIP-seq (anti-γH2AX)


Others:   

control: GSM2808022-K562_A1_Inp


Fastqc:  



Genome Browser

Manual

  link to genome browser visualization (rDNA locus is firstly shown for human and mouse samples)



Distribution

Manual




Genomic distribution Repeat distribution Top 10 simple repeats


Quantification

Manual

Peak Intensity Top 10 Peaks
Chromosome Start End Summit Intensity Strand
rDNA2820028799284994.36943/
chr222347960023522399235009994.36653/
chr91336060001340469991338264994.19493/
chr222352320023632799235779994.08398/
chr222324900023478399233636993.85348/
rDNA4160042399419993.82625/
chr222299700023241799231193993.70118/
chr222203140022089599220604993.52213/
chr222231280022471799223922993.48822/
chr222223900022309799222743993.37247/
Download the Full Peak List


Overlapped Peaks from Replicates




Average Peak Intensity Top 10 Merged Peaks
Chromosome Start End Summit Intensity Strand
rDNA2840028799284995.7879/
chr91336060001340467991338264994.19584/
rDNA4160042399419993.82625/
chr222324900023412399233636993.78935/
chr222299740023241799231193993.70606/
chr222203200022089599220604993.55538/
chr222231280022469999223922993.52047/
chr222290180022968999229352993.37705/
chr222223900022309799222743993.37247/
Download the Full Merged Peak List


Visualization

Manual



Motif Analysis

Manual





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