DNA Damage Atlas


GSM2808032-K562_A3_gH2Ax




Basic Information

Manual

Sample ID:   

SRR6156987


Source Project ID:   

GSE104800

Cell Type:   

K562


Organism:   

Homo sapiens


Treatment:   

Aphidicolin


Layout:   

SINGLE


Instrument model:   

NextSeq 500


Technique:   

ChIP-seq (anti-γH2AX)


Others:   

control: GSM2808024-K562_A3_Inp


Fastqc:  




Genome Browser

Manual

  link to genome browser visualization (rDNA locus is firstly shown for human and mouse samples)




Quantification

Manual

Peak Intensity Top 10 Peaks
Chromosome Start End Summit Intensity Strand
rDNA2840028799285994.51549/
chr222341320023478399234457994.51322/
chr91336060001340467991338263994.0462/
chr222324900023412399233306993.72796/
chr222299740023241799231195993.67795/
chr222203200022089599220607993.24296/
chr222223900022309799222743993.22327/
chr222290180022969599229356993.20795/
chr222231280022469999223913993.18168/
chr222254840022574999225616993.16351/
Download the Full Peak List



Overlapped Peaks from Replicates




Average Peak Intensity Top 10 Merged Peaks
Chromosome Start End Summit Intensity Strand
rDNA2840028799285994.51549/
chr222341320023478399234457994.51322/
chr91336060001340467991338263994.0462/
chr222324900023412399233306993.72796/
chr222299740023241799231195993.67795/
chr222203200022089599220607993.24296/
chr222290180022968999229356993.23282/
chr222223900022309799222743993.22327/
chr222231280022469999223913993.18168/
chr222254840022574999225616993.16351/
Download the Full Merged Peak List



Motif Analysis

Manual





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