DNA Damage Atlas

GSM2854841-Chr3_DMSO_ExpC

Basic Information Genome Browser Distribution Quantification Visualization Motif Analysis


Basic Information

Manual

Sample ID:   

SRR6283691


Source Project ID:   

GSE106822

Cell Type:   

NSPCs


Organism:   

Mus musculus


Strain:   

129SVE


Treatment:   

DMSO


Genotype:   

Xrcc4-/- p53-/-


Targeted break:   

Chr3_sgRNA


Layout:   

PAIRED


Instrument model:   

Illumina MiSeq


Technique:   

HTGTS


Fastqc:  



Genome Browser

Manual

  link to genome browser visualization (rDNA locus is firstly shown for human and mouse samples)



Distribution

Manual




Genomic distribution Repeat distribution Top 10 simple repeats


Quantification

Manual

Peak Intensity Top 10 Peaks
Chromosome Start End Summit Intensity Strand
chr94799299447995054479933483018.58-
chr77982663279829179798282622889.83-
chr115639786256398205563979292589.87+
chr123465934434660581346601491692.73-
chr156821343668215025682144931517.41+
chr88420851184209122842087111453.89-
chr183224818432249332322485681326.52+
chr51040723171040725201040723191250.28+
chrX1206398912064454120641891091.64-
chr2167614281167614791167614481870.907-
Download the Full Peak List


Visualization

Manual



Motif Analysis

Manual





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