DNA Damage Atlas

GSM2854845-Chr4_DMSO_ExpA

Basic Information Genome Browser Distribution Quantification Visualization Motif Analysis


Basic Information

Manual

Sample ID:   

SRR6283695


Source Project ID:   

GSE106822

Cell Type:   

NSPCs


Organism:   

Mus musculus


Strain:   

129SVE


Treatment:   

DMSO


Genotype:   

Xrcc4-/- p53-/-


Targeted break:   

Chr4_sgRNA


Layout:   

PAIRED


Instrument model:   

Illumina MiSeq


Technique:   

HTGTS


Fastqc:  



Genome Browser

Manual

  link to genome browser visualization (rDNA locus is firstly shown for human and mouse samples)



Distribution

Manual




Genomic distribution Repeat distribution Top 10 simple repeats


Quantification

Manual

Peak Intensity Top 10 Peaks
Chromosome Start End Summit Intensity Strand
chr11393056761393059501393057072501.14+
chr83873690038737152387369001529.72+
chr51172767501172779181172770971503.52-
chr66310573163106027631058271157.62+
chr151946515119465360194651601024.69+
chr101085399291085401411085401411010.19-
chr1476939044769425847694034967.956+
chr13331666933316689733166693839.844+
chr3430546894305489643054889827.673-
chr13823131688231337982313168811.982+
Download the Full Peak List


Visualization

Manual



Motif Analysis

Manual





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