DNA Damage Atlas


GSM2854913-Chr17_DMSO_ExpB




Basic Information

Manual

Sample ID:   

SRR6283763


Source Project ID:   

GSE106822

Cell Type:   

NSPCs


Organism:   

Mus musculus


Strain:   

129SVE


Treatment:   

DMSO


Genotype:   

Xrcc4-/- p53-/-


Targeted break:   

Chr17_sgRNA


Layout:   

PAIRED


Instrument model:   

Illumina MiSeq


Technique:   

HTGTS


Fastqc:  




Genome Browser

Manual

  link to genome browser visualization (rDNA locus is firstly shown for human and mouse samples)




Quantification

Manual

Peak Intensity Top 10 Peaks
Chromosome Start End Summit Intensity Strand
chr141112019631112065131112041563535.56-
chr51361310661361335661361321991992.91-
chr131706013917061225170610071283.01+
chr111071885191071897971071891621189.37-
chr1180217237180217555180217320929.428+
chr6115163821115164052115163821913.909+
chr17101421161014231810142116836.091+
chr17565478185654963656548503836.091-
chr15891263448912654989126549823.856-
chr3910052379100555691005556794.155-
Download the Full Peak List



Motif Analysis

Manual





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