DNA Damage Atlas


GSM2854944-XR_DMSO_60M_1




Basic Information

Manual

Sample ID:   

SRR6283653


Source Project ID:   

GSE106823

Cell Type:   

skin fibroblasts


Organism:   

Homo sapiens


Treatment:   

UV + DMSO


Treatment Time:   

UV: 60mins


Treatment Dose:   

UVC: 20J/m2 + DMSO: 0.1%


Genotype:   

XP-C mutant


Harvested Time:   

repair time: 60 minutes


Layout:   

SINGLE


Instrument model:   

Illumina HiSeq 2000


Technique:   

XR-seq


Fastqc:  




Genome Browser

Manual

  link to genome browser visualization (rDNA locus is firstly shown for human and mouse samples)




Quantification

Manual

Peak Intensity Top 10 Peaks
Chromosome Start End Summit Intensity Strand
chr2030101887301056843010408913.0942/
chr314108493014108984114108735512.0133/
chr1657218470572221885721994711.8186/
chr1211440339011440454711440412411.197/
chr1755035103550388685503559810.8341/
chr1738374895383766183837570810.2622/
chr1575164784751661407516522510.1993/
chr12722357827227586272267779.95886/
chr18616957686174778861739299.6586/
chr146485372364856936648550039.64417/
Download the Full Peak List



Overlapped Peaks from Replicates




Average Peak Intensity Top 10 Merged Peaks
Chromosome Start End Summit Intensity Strand
chr2030101887301056843010408913.0942/
chr1755035103550387995503559810.989/
chr812918734012919194412918919810.3808/
chr186170015861747788617392910.365/
chr1738374895383766183837570810.2622/
chr1575164784751661407516522510.1993/
chr1953604629536070155360581210.1987/
chr194002891940031364400300119.66624/
chr11518792951518825441518820689.5912/
chr11096174471096197331096186199.57274/
Download the Full Merged Peak List



Motif Analysis

Manual





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