DNA Damage Atlas


GSM2854953-XR_DRB2_R10_60M_2




Basic Information

Manual

Sample ID:   

SRR6283662


Source Project ID:   

GSE106823

Cell Type:   

skin fibroblasts


Organism:   

Homo sapiens


Treatment:   

DRB before UV + released


Treatment Time:   

DRB: 2hrs before UV: 60mins + release 10mins


Treatment Dose:   

UVC: 20J/m2 + DRB: 100uM


Genotype:   

XP-C mutant


Harvested Time:   

repair time: 60 minutes


Layout:   

SINGLE


Instrument model:   

Illumina HiSeq 2000


Technique:   

XR-seq


Fastqc:  




Genome Browser

Manual

  link to genome browser visualization (rDNA locus is firstly shown for human and mouse samples)




Quantification

Manual

Peak Intensity Top 10 Peaks
Chromosome Start End Summit Intensity Strand
chr114981468614982229414981677410.2795/
chr203010190930105989301041319.79963/
chr11096174331096189941096185499.69685/
chr71583917661583978091583933579.38684/
chr31705812881705887981705853589.33464/
chr91276166611276246031276216579.02903/
chr186574466628876612208.37405/
chr163070050307457430714268.31401/
chr139922241499229365992260758.12766/
chr194999883450004417500022248.02413/
Download the Full Peak List



Overlapped Peaks from Replicates




Average Peak Intensity Top 10 Merged Peaks
Chromosome Start End Summit Intensity Strand
chr114981476214982218414981677410.5371/
chr2030102009301059893010413110.0459/
chr11096174331096189941096185499.69685/
chrX7050327870507799705053629.58775/
chr71583917661583977331583933579.5064/
chr91276167651276245271276216579.22856/
chr186574466628326612208.45957/
chr63354447533548016335465638.4199/
chr194092646840932517409297568.40439/
chr11759677161759719301759712428.29067/
Download the Full Merged Peak List



Motif Analysis

Manual





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