DNA Damage Atlas


GSM2857674-Lig4-KO_NCDel_-2_5primeSm_rep1




Basic Information

Manual

Sample ID:   

SRR6293477


Source Project ID:   

GSE106922

Cell Type:   

CH12F3 murine lymphoma cell


Organism:   

Mus musculus


Treatment:   

cytokine stimulation


Genotype:   

Lig4-/- NCDel cells clone #2


Targeted break:   

non-coding IgH Sm-Sa deletion


Layout:   

PAIRED


Instrument model:   

Illumina MiSeq


Technique:   

HTGTS


Fastqc:  




Genome Browser

Manual

  link to genome browser visualization (rDNA locus is firstly shown for human and mouse samples)




Quantification

Manual

Peak Intensity Top 10 Peaks
Chromosome Start End Summit Intensity Strand
chr121133625001133660981133647111743.16-
chr128560038485600668856003841540.75+
chr121126159211126161221126161211451.32-
chr94460287344603074446028731451.32+
chr81268331541268333561268333541444.14-
chr71095194691095196721095194691437.02+
chr137664578076645984766457801429.98+
chr108067494580675255806751451411.53-
chr18652748886527749865274881117.68+
Download the Full Peak List



Motif Analysis

Manual





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