DNA Damage Atlas

GSM2857677-WT_CH12F3_c-myc_5primeBE_rep1

Basic Information Genome Browser Distribution Quantification Visualization Motif Analysis


Basic Information

Manual

Sample ID:   

SRR6293480


Source Project ID:   

GSE106922

Cell Type:   

CH12F3 murine lymphoma cell


Organism:   

Mus musculus


Treatment:   

cytokine stimulation + c-myc gRNA/Cas9


Genotype:   

WT


Targeted break:   

c-myc gRNA/Cas9 induced bait DSB


Layout:   

PAIRED


Instrument model:   

Illumina MiSeq


Technique:   

HTGTS


Fastqc:  



Genome Browser

Manual

  link to genome browser visualization (rDNA locus is firstly shown for human and mouse samples)



Distribution

Manual




Genomic distribution Repeat distribution Top 10 simple repeats


Quantification

Manual

Peak Intensity Top 10 Peaks
Chromosome Start End Summit Intensity Strand
chr1211342391711342651711342536815088-
chr91198124491198126531198124519146.67+
chr121132598611132649311132619913680.32+
chr21140559861140561891140561862407.36-
chr25128944151289647512896471940.97-
chr91595556315955788159557881579.62-
chr192764583727646040276458401313.1+
chr127973082979731049797308291211.64+
chr101166064061166067091166064731172.98+
chr71387509491387511521387509491094.25+
Download the Full Peak List


Overlapped Peaks from Replicates




Average Peak Intensity Top 10 Merged Peaks
Chromosome Start End Summit Intensity Strand
chr1211342394511342651711342536815165.9-
chr91198124501198126511198124518775.67+
chr121132598611132646421132619914035.26+
chr9159555831595578815955788979.341-
chr14316139123161435031614036824.953+
chr4591272235912742859127423774.995-
chr15749329567493362974933156607.929-
chr15588820455888224658882045450.466+
chr12696086616960889769608661380.078+
Download the Full Merged Peak List


Visualization

Manual



Motif Analysis

Manual





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