DNA Damage Atlas

GSM2857679-WT_CH12F3_c-myc_5primeBE_rep3

Basic Information Genome Browser Distribution Quantification Visualization Motif Analysis


Basic Information

Manual

Sample ID:   

SRR6293482


Source Project ID:   

GSE106922

Cell Type:   

CH12F3 murine lymphoma cell


Organism:   

Mus musculus


Treatment:   

cytokine stimulation + c-myc gRNA/Cas9


Genotype:   

WT


Targeted break:   

c-myc gRNA/Cas9 induced bait DSB


Layout:   

PAIRED


Instrument model:   

Illumina MiSeq


Technique:   

HTGTS


Fastqc:  



Genome Browser

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  link to genome browser visualization (rDNA locus is firstly shown for human and mouse samples)



Distribution

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Genomic distribution Repeat distribution Top 10 simple repeats


Quantification

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Peak Intensity Top 10 Peaks
Chromosome Start End Summit Intensity Strand
chr1211342394511342660111342507214619.9+
chr91198124501198126511198124518489.19+
chr121132587061132646421132623963503.83+
chr127586101975861221758612191598.11-
chr74701262847012830470126301141.51+
chr73750407537504278375042751135.89-
chr127973083179731043797308311087.66+
chr10125125688125125892125125692904.254+
chr4591272235912742859127423899.843-
chr15749329417493362974932941804.365+
Download the Full Peak List


Overlapped Peaks from Replicates




Average Peak Intensity Top 10 Merged Peaks
Chromosome Start End Summit Intensity Strand
chr1211342394511342651711342507215165.9+
chr91198124501198126511198124518775.67+
chr121132598611132646421132623964035.26+
chr127973083179731043797308311067.73+
chr9159555831595578815955783979.341-
chr10125125688125125892125125692887.683+
chr14316139123161435031614109824.953+
chr4591272235912742859127423774.995-
chr7138750950138751152138750950672.353+
chr12113310290113313035113310290486.682+
Download the Full Merged Peak List


Visualization

Manual



Motif Analysis

Manual





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