DNA Damage Atlas

GSM2857696-Lig4-KO_clone_-2_c-myc_5primeBE_rep2

Basic Information Genome Browser Distribution Quantification Visualization Motif Analysis


Basic Information

Manual

Sample ID:   

SRR6293499


Source Project ID:   

GSE106922

Cell Type:   

CH12F3 murine lymphoma cell


Organism:   

Mus musculus


Treatment:   

cytokine stimulation + c-myc gRNA/Cas9


Genotype:   

Lig4-/- CH12F3 clone #2


Targeted break:   

c-myc gRNA/Cas9 induced bait DSB


Layout:   

PAIRED


Instrument model:   

Illumina MiSeq


Technique:   

HTGTS


Fastqc:  



Genome Browser

Manual

  link to genome browser visualization (rDNA locus is firstly shown for human and mouse samples)



Distribution

Manual




Genomic distribution Repeat distribution Top 10 simple repeats


Quantification

Manual

Peak Intensity Top 10 Peaks
Chromosome Start End Summit Intensity Strand
chr121134213521134297941134256973811.13+
chr91198122891198126551198124512193.32+
chr73750407337504278375042751545.74-
chr91595556715955788159557751529.42-
chr61194549941194552151194549991147.07+
chr52370660023707632237068651064.44-
chr10125125690125125908125125692969.042+
chr8123426181123430244123426811961.887-
chr6117432865117433069117432867931.991+
chr7470126284701283247012628828.436+
Download the Full Peak List


Overlapped Peaks from Replicates




Average Peak Intensity Top 10 Merged Peaks
Chromosome Start End Summit Intensity Strand
chr91198124491198126521198124513780.41+
chr91595556715955788159557751596.07-
chr73750407437504277375042751386.46-
chr61194549961194552151194549991083.11+
chr74701262847012831470126281008.72+
chr81234262361234302441234268111007.52-
chr12113312446113314877113313325897.974+
chr5237066002370763223706865895.296-
chr17294910862949239129491412885.87+
chr8126589866126593505126591145791.232-
Download the Full Merged Peak List


Visualization

Manual



Motif Analysis

Manual





Copyright © 2023 All Rights Reserved by Wu lab