DNA Damage Atlas

GSM2857700-ATM-KO_NSPC_c-myc_rep3

Basic Information Genome Browser Distribution Quantification Visualization Motif Analysis


Basic Information

Manual

Sample ID:   

SRR6293503


Source Project ID:   

GSE106922

Cell Type:   

NSPCs


Organism:   

Mus musculus


Genotype:   

ATM-/-


Targeted break:   

c-myc gRNA/Cas9 induced bait DSB


Layout:   

PAIRED


Instrument model:   

Illumina MiSeq


Technique:   

HTGTS


Fastqc:  



Genome Browser

Manual

  link to genome browser visualization (rDNA locus is firstly shown for human and mouse samples)



Distribution

Manual




Genomic distribution Repeat distribution Top 10 simple repeats


Quantification

Manual

Peak Intensity Top 10 Peaks
Chromosome Start End Summit Intensity Strand
chr101217632271217634341217632272812.49+
chr156197357261974310619737722366.61-
chr101056180010562001105620001930.96-
chr143281367632813877328138761930.96-
chr144581281345813014458128131930.96+
chr31039681971039683981039683971930.96-
chr142713751027137712271375101921.4+
chr155802943858029640580294381921.4+
chr186285883862859040628588381921.4+
chr101268894461268896511268896461893.28-
Download the Full Peak List


Visualization

Manual



Motif Analysis

Manual





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