DNA Damage Atlas

GSM2876119-ATRi_18h_RPAChIPSeq_rep2

Basic Information Genome Browser Distribution Quantification Visualization Motif Analysis


Basic Information

Manual

Sample ID:   

SRR6347658


Source Project ID:   

GSE115625

Cell Type:   

MEF


Organism:   

Mus musculus


Treatment:   

ATR-45 inhibitor


Treatment Time:   

18hrs


Treatment Dose:   

1uM


Genotype:   

ATR+/-


Layout:   

SINGLE


Instrument model:   

Illumina HiSeq 2500


Technique:   

ChIP-seq (anti-RPA)


Others:   

control: GSM2876120-ATRi_18h_Input_for_rep2


Fastqc:  



Genome Browser

Manual

  link to genome browser visualization (rDNA locus is firstly shown for human and mouse samples)



Distribution

Manual




Genomic distribution Repeat distribution Top 10 simple repeats


Quantification

Manual

Peak Intensity Top 10 Peaks
Chromosome Start End Summit Intensity Strand
chrUn_JH58430461723693066256116.9356/
chrUn_JH58430458370615276067214.7488/
rDNA045231985.02395/
chr77946587779467656794664623.60204/
chr61226159041226184631226163843.55533/
chr183486067634862087348614073.22398/
chrX1350534061350547481350541433.19419/
chr131200254131200264701200257712.7726/
chr68777204287775411877751102.68106/
chr71208346781208361761208355362.67175/
Download the Full Peak List


Overlapped Peaks from Replicates




Average Peak Intensity Top 10 Merged Peaks
Chromosome Start End Summit Intensity Strand
chrUn_JH58430461723693066256116.9356/
chrUn_JH58430458374615276067214.7675/
chr77946619179467317794664625.22481/
chr183486101834861864348614074.91179/
chrX1350536431350547481350541433.85948/
chr61226159041226184631226163843.55533/
chr68777204287775409877751102.68265/
chr68777557487777608877760072.58058/
chr51043301891043323121043312502.56511/
chr69051829390520762905188602.40052/
Download the Full Merged Peak List


Visualization

Manual



Motif Analysis

Manual





Copyright © 2023 All Rights Reserved by Wu lab