DNA Damage Atlas

GSM2891669-gh2ax_ASF_IP_2_1

Basic Information Genome Browser Distribution Quantification Visualization Motif Analysis


Basic Information

Manual

Sample ID:   

SRR6491531


Source Project ID:   

GSE108172

Cell Type:   

HeLa


Organism:   

Homo sapiens


Treatment:   

Doxycycline


Treatment Time:   

72hrs


Treatment Dose:   

2mg/mL


Genotype:   

shASF


Layout:   

SINGLE


Instrument model:   

Illumina HiSeq 4000


Technique:   

ChIP-seq (anti-γH2AX)


Fastqc:  



Genome Browser

Manual

  link to genome browser visualization (rDNA locus is firstly shown for human and mouse samples)



Distribution

Manual




Genomic distribution Repeat distribution Top 10 simple repeats


Quantification

Manual

Peak Intensity Top 10 Peaks
Chromosome Start End Summit Intensity Strand
chr1152460005248399524719948.0651/
chrM7800163991209921.3124/
chrM03999199919.1521/
rDNA13600147991419911.86/
rDNA16600167991669910.0292/
rDNA2840029399288998.99015/
chr71572538001572543991572540998.07988/
chr186099840060998599609984997.52191/
rDNA2460024799246997.02045/
chr21555114001555115991555114996.01753/
Download the Full Peak List


Visualization

Manual



Motif Analysis

Manual





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