DNA Damage Atlas


GSM2891672-gh2ax_TOP1_IP_2_1




Basic Information

Manual

Sample ID:   

SRR6491534


Source Project ID:   

GSE108172

Cell Type:   

HeLa


Organism:   

Homo sapiens


Treatment:   

Doxycycline


Treatment Time:   

72hrs


Treatment Dose:   

2mg/mL


Genotype:   

shTOP1


Layout:   

SINGLE


Instrument model:   

Illumina HiSeq 4000


Technique:   

ChIP-seq (anti-γH2AX)


Fastqc:  




Genome Browser

Manual

  link to genome browser visualization (rDNA locus is firstly shown for human and mouse samples)




Quantification

Manual

Peak Intensity Top 10 Peaks
Chromosome Start End Summit Intensity Strand
chr1152460005248399524719938.1702/
chrM9400163991289911.3315/
chrM0399919999.4504/
rDNA1660016799166998.77409/
chr21555114001555115991555114997.40923/
rDNA2840029399288996.71929/
rDNA1260014799136996.19334/
rDNA3120032599318994.52077/
chr51666002107991886994.37882/
chr53658003735993696993.9801/
Download the Full Peak List



Motif Analysis

Manual





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