DNA Damage Atlas

GSM2891674-prpa_ASF_IP_2_1

Basic Information Genome Browser Distribution Quantification Visualization Motif Analysis


Basic Information

Manual

Sample ID:   

SRR6491536


Source Project ID:   

GSE108172

Cell Type:   

HeLa


Organism:   

Homo sapiens


Treatment:   

NT


Genotype:   

shASF


Layout:   

SINGLE


Instrument model:   

Illumina HiSeq 4000


Technique:   

ChIP-seq (anti-RPA)


Others:   

control: GSM2891673-prpa_ASF_INP_2_1


Fastqc:  



Genome Browser

Manual

  link to genome browser visualization (rDNA locus is firstly shown for human and mouse samples)



Distribution

Manual




Genomic distribution Repeat distribution Top 10 simple repeats


Quantification

Manual

Peak Intensity Top 10 Peaks
Chromosome Start End Summit Intensity Strand
chr1165263630652766826526806111.6488/
chr116518075365217688651905409.56969/
chr18604168186052076860487538.71873/
chr81287458101287565731287507978.68407/
chr75560393557291755661478.62967/
chr107403186574038846740364458.48183/
chr115245644524832952463558.26741/
chr116172867461738015617307167.98789/
chr51721913511721999911721958067.81112/
chr175791362857925589579184507.04759/
Download the Full Peak List


Visualization

Manual



Motif Analysis

Manual





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