DNA Damage Atlas

GSM2891678-prpa_TOP1_IP_2_1

Basic Information Genome Browser Distribution Quantification Visualization Motif Analysis


Basic Information

Manual

Sample ID:   

SRR6491540


Source Project ID:   

GSE108172

Cell Type:   

HeLa


Organism:   

Homo sapiens


Treatment:   

NT


Genotype:   

shTOP1


Layout:   

SINGLE


Instrument model:   

Illumina HiSeq 4000


Technique:   

ChIP-seq (anti-RPA)


Others:   

control: GSM2891677-prpa_TOP1_INP_2_1


Fastqc:  



Genome Browser

Manual

  link to genome browser visualization (rDNA locus is firstly shown for human and mouse samples)



Distribution

Manual




Genomic distribution Repeat distribution Top 10 simple repeats


Quantification

Manual

Peak Intensity Top 10 Peaks
Chromosome Start End Summit Intensity Strand
chr116526368565276657652751609.38874/
chr81287456561287567211287545497.50312/
chr175791359857925591579206357.47215/
chr115245637524830052463537.13272/
chr116518207565217272651946806.784/
chr61322670551322730291322715136.65803/
chr18604077586051644860502036.55978/
chr51721914821721998921721948286.35386/
chr75559941557293955663666.0718/
chr107403217174038145740364486.03898/
Download the Full Peak List


Visualization

Manual



Motif Analysis

Manual





Copyright © 2023 All Rights Reserved by Wu lab