DNA Damage Atlas


GSM2891683-gH2AX_U2OS_Ctrl_IP




Basic Information

Manual

Sample ID:   

SRR6491545


Source Project ID:   

GSE108172

Cell Type:   

U2OS


Organism:   

Homo sapiens


Treatment:   

Doxycycline


Treatment Time:   

72hrs


Treatment Dose:   

2mg/mL


Genotype:   

WT


Layout:   

SINGLE


Instrument model:   

Illumina HiSeq 4000


Technique:   

ChIP-seq (anti-γH2AX)


Others:   

control: GSM2891682-gH2AX_U2OS_Ctrl_Inp


Fastqc:  




Genome Browser

Manual

  link to genome browser visualization (rDNA locus is firstly shown for human and mouse samples)




Quantification

Manual

Peak Intensity Top 10 Peaks
Chromosome Start End Summit Intensity Strand
chr122761600027616199276160996.68862/
chr12056166002056167992056166995.50827/
chr171894200189439918942995.50827/
chr26650360066503799665036995.50827/
chr71102604001102605991102604995.50827/
chr108032800803299980328995.11482/
chr12188632002188633992188632995.11482/
chr12333706002333707992333706995.11482/
chr146919160069191799691916995.11482/
chr213656360036563799365636995.11482/
Download the Full Peak List



Motif Analysis

Manual





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