DNA Damage Atlas

GSM2916153-LD_ZT17_A_XR-seq

Basic Information Genome Browser Distribution Quantification Visualization Motif Analysis


Basic Information

Manual

Sample ID:   

SRR6451560


Source Project ID:   

GSE108932

Cell Type:   

seedlings


Organism:   

Arabidopsis thaliana


Treatment:   

UVC (254 nm)


Treatment Time:   

2mins


Treatment Dose:   

120J/m2


Genotype:   

ecotype: Col-0


Harvested Time:   

zeitgeber time: 17


Layout:   

SINGLE


Instrument model:   

illumina HiSeq 4000


Technique:   

XR-seq


Fastqc:  



Genome Browser

Manual

  link to genome browser visualization (rDNA locus is firstly shown for human and mouse samples)



Distribution

Manual




Genomic distribution Repeat distribution Top 10 simple repeats


Quantification

Manual

Peak Intensity Top 10 Peaks
Chromosome Start End Summit Intensity Strand
2952410385996344.7608/
313591385135923961359188341.9675/
521316887213220922131907441.2969/
516131305161353341613344839.1149/
129045892290493272904652338.2148/
413743148137461121374371836.5043/
554974665501146549971236.359/
399893469991897999025635.7471/
218275782182785001827727635.5478/
122508480225122652250917735.4459/
Download the Full Peak List


Overlapped Peaks from Replicates




Average Peak Intensity Top 10 Merged Peaks
Chromosome Start End Summit Intensity Strand
521316887213213702131907445.7684/
2952510385996344.8128/
313591398135923961359188342.5142/
516131355161352801613344840.0361/
519713364197149311971412738.8541/
554974665501057549971237.1845/
413743148137461121374371836.5043/
416887046168908851688817536.3848/
521683304216884202168432635.9323/
318387190183897231838835035.9297/
Download the Full Merged Peak List


Visualization

Manual



Motif Analysis

Manual





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