Sample Detail

DNA Damage Atlas

GSM2916160-LD_ZT14_A_XR-seq

Basic Information

Manual

Sample ID:

SRR6451567

Source Project ID:

Cell Type:

seedlings

Organism:

Arabidopsis thaliana

Treatment:

UVC (254 nm)

Treatment Time:

2mins

Treatment Dose:

120J/m2

Genotype:

ecotype: Col-0

Harvested Time:

zeitgeber time: 14

Layout:

SINGLE

Instrument model:

illumina HiSeq 4000

Technique:

XR-seq

Fastqc:

Genome Browser

Manual

link to genome browser visualization (rDNA locus is firstly shown for human and mouse samples)

Distribution

Manual

Genomic distribution	Repeat distribution	Top 10 simple repeats

Quantification

Manual

Chromosome	Start	End	Summit	Intensity	Strand
2	9532	10325	9961	53.0111	/
3	13591397	13592404	13591887	45.9613	/
5	21316887	21321385	21319073	45.003	/
5	5497473	5501043	5499707	39.0963	/
3	14196357	14196946	14196618	38.85	/
5	16131310	16135255	16133448	38.582	/
4	13743144	13746116	13745203	38.5667	/
3	9989349	9991835	9990257	36.6518	/
1	12840053	12842415	12840474	36.5595	/
2	18275774	18278551	18277633	36.3159	/

Download the Full Peak List

Overlapped Peaks from Replicates

Average Peak Intensity

Top 10 Merged Peaks

Chromosome	Start	End	Summit	Intensity	Strand
2	9532	10325	9961	53.0111	/
3	13591397	13592404	13591887	45.9613	/
5	21316887	21321376	21319073	45.0932	/
5	5497473	5501043	5499707	39.0963	/
3	14196357	14196946	14196618	38.85	/
5	16131310	16135255	16133448	38.582	/
4	13743144	13746116	13745203	38.5667	/
3	19811395	19812628	19811938	38.1247	/
2	13529454	13532282	13530276	37.8212	/
2	18275774	18278426	18277633	37.5982	/

Download the Full Merged Peak List

Visualization

Manual

Download the matrix file

Motif Analysis

Manual

Download

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