DNA Damage Atlas

GSM2971935-B6xPWD_F7_Prdm9ko_DMC1_SSDS_A

Basic Information Genome Browser Distribution Quantification Visualization Motif Analysis


Basic Information

Manual

Sample ID:   

SRR6653236 , SRR6653237 , SRR6653238 , SRR6653239


Source Project ID:   

GSE109874

Cell Type:   

Testis


Organism:   

Mus musculus


Strain:   

C57BL/6J x C57BL/6J F7


Genotype:   

Prdm9-/-


Harvested Time:   

age: Adult


Layout:   

PAIRED


Instrument model:   

Illumina HiSeq 2500


Technique:   

ChIP-seq (anti-DMC1)


Fastqc:  



Genome Browser

Manual

  link to genome browser visualization (rDNA locus is firstly shown for human and mouse samples)



Distribution

Manual




Genomic distribution Repeat distribution Top 10 simple repeats


Quantification

Manual

Peak Intensity Top 10 Peaks
Chromosome Start End Summit Intensity Strand
chr2921844229218459592184495212.88-
chr5842218184231808422671198.15+
chr10122986145122986566122986332196.825+
chr15391981203919846739198120179.1+
chrX204251732042615220425430178.686+
chr2180644011806476618064691163.961+
chr5210552562105595821055763163.943-
chr1177257988177258540177258034162.624+
chrX107815644107816544107816513158.566+
chrX111462566111463625111463158156.494-
Download the Full Peak List


Overlapped Peaks from Replicates




Average Peak Intensity Top 10 Merged Peaks
Chromosome Start End Summit Intensity Strand
chrX204252302042546020425430210.161+
chr10122986145122986564122986332197.765+
chr5842223484227688422671185.348+
chr17311496431153723115340174.889-
chrX111462856111463242111463158172.93-
chr2180644011806476618064691163.961+
chr1177257988177258540177258034162.624+
chr5209510602095154520951150161.361-
chr2687250868729016872629152.279-
chr14103346558103347031103346775145.989+
Download the Full Merged Peak List


Visualization

Manual



Motif Analysis

Manual





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