DNA Damage Atlas

GSM2974241-WTZT0KIDNEY_rep2

Basic Information Genome Browser Distribution Quantification Visualization Motif Analysis


Basic Information

Manual

Sample ID:   

SRR6659132


Source Project ID:   

GSE109938

Cell Type:   

Kidney


Organism:   

Mus musculus


Strain:   

C57BL/6


Treatment:   

Cisplatin


Treatment Dose:   

10 mg cisplatin/kg


Genotype:   

WT


Harvested Time:   

zeitgeber time: 0


Layout:   

SINGLE


Instrument model:   

illumina HiSeq 2500


Technique:   

XR-seq


Fastqc:  



Genome Browser

Manual

  link to genome browser visualization (rDNA locus is firstly shown for human and mouse samples)



Distribution

Manual




Genomic distribution Repeat distribution Top 10 simple repeats


Quantification

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Peak Intensity Top 10 Peaks
Chromosome Start End Summit Intensity Strand
chr131780247117806766178038118.69705/
chr112123750421241099212391797.82425/
chr54323042343237206432340177.76151/
chr101209763111209805821209781957.44284/
chr26012358660126810601251716.82729/
chr18652379486530167865280556.81323/
chr101396341813969364139658616.64477/
chr95948444259488441594868286.63259/
chr35841303358420481584166286.59055/
chr11061702981061750321061719686.4713/
Download the Full Peak List


Overlapped Peaks from Replicates




Average Peak Intensity Top 10 Merged Peaks
Chromosome Start End Summit Intensity Strand
chr543231646432363444323401710.7045/
chr131780247117806493178038119.26244/
chr35841334558418505584166288.73552/
chr27297796772982300729791988.57449/
chr112123750421240843212391798.12381/
chr21044919891044954781044939498.10507/
chr131039183511039231021039209687.76733/
chr151211647412120012121183987.66687/
chr101209763111209804481209781957.64756/
chr21806302218067201180642527.51071/
Download the Full Merged Peak List


Visualization

Manual



Motif Analysis

Manual





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