DNA Damage Atlas

GSM2974243-WTZT4KIDNEY_rep2

Basic Information Genome Browser Distribution Quantification Visualization Motif Analysis


Basic Information

Manual

Sample ID:   

SRR6659134


Source Project ID:   

GSE109938

Cell Type:   

Kidney


Organism:   

Mus musculus


Strain:   

C57BL/6


Treatment:   

Cisplatin


Treatment Dose:   

10 mg cisplatin/kg


Genotype:   

WT


Harvested Time:   

zeitgeber time: 4


Layout:   

SINGLE


Instrument model:   

illumina HiSeq 2500


Technique:   

XR-seq


Fastqc:  



Genome Browser

Manual

  link to genome browser visualization (rDNA locus is firstly shown for human and mouse samples)



Distribution

Manual




Genomic distribution Repeat distribution Top 10 simple repeats


Quantification

Manual

Peak Intensity Top 10 Peaks
Chromosome Start End Summit Intensity Strand
chrM296800294318.3933/
chr272977921729820457297912710.1116/
chr128688148486886344868842999.99287/
chrUn_JH5843045815861747598759.74851/
chr21044920811044955101044938798.91313/
chr151211650912120015121181658.4853/
chr113026602230269914302681278.45385/
chr54323164043237919432340937.82366/
chr91244383851244434651244405237.73818/
chr121162798391162829021162816517.62059/
Download the Full Peak List


Overlapped Peaks from Replicates




Average Peak Intensity Top 10 Merged Peaks
Chromosome Start End Summit Intensity Strand
chrM296794294318.4096/
chr588719613887230868872157212.9001/
chr272978067729813507297912712.5005/
chr543232063432362774323409311.211/
chr210449275410449551010449387910.8867/
chr1286881484868860568688429910.6001/
chr970678612706803937067930110.5077/
chrUn_JH58430458183616205987510.1796/
chr141209102771209125671209113889.88207/
chr41125354211254544112540669.74444/
Download the Full Merged Peak List


Visualization

Manual



Motif Analysis

Manual





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