DNA Damage Atlas


GSM2974244-WTZT8KIDNEY_rep1




Basic Information

Manual

Sample ID:   

SRR6659135


Source Project ID:   

GSE109938

Cell Type:   

Kidney


Organism:   

Mus musculus


Strain:   

C57BL/6


Treatment:   

Cisplatin


Treatment Dose:   

10 mg cisplatin/kg


Genotype:   

WT


Harvested Time:   

zeitgeber time: 8


Layout:   

SINGLE


Instrument model:   

illumina HiSeq 2500


Technique:   

XR-seq


Fastqc:  




Genome Browser

Manual

  link to genome browser visualization (rDNA locus is firstly shown for human and mouse samples)




Quantification

Manual

Peak Intensity Top 10 Peaks
Chromosome Start End Summit Intensity Strand
chrM276836451224.7516/
chr1317802581178063751780380710.316/
chrUn_JH5843045811561789598759.80346/
chr146275849062762748627602639.74653/
chr54323135343236721432340099.36536/
chr151211605212120346121181449.13443/
chr56576254665765815657643449.03117/
chr79044186590445202904429828.92296/
chr91244388301244440981244425648.90266/
chr96473561764738913647375188.72686/
Download the Full Peak List



Overlapped Peaks from Replicates




Average Peak Intensity Top 10 Merged Peaks
Chromosome Start End Summit Intensity Strand
chrM276836451224.7516/
chr912443883012444333312444256410.3964/
chrUn_JH5843045811761789598759.8088/
chr146275849062762748627602639.74653/
chr54323135343236721432340099.36536/
chr56576254665765815657643449.03117/
chr96473561764738913647375188.72686/
chr31428802791428831721428819278.57215/
chr21044920821044956591044944368.56009/
chr191279394012797275127950778.54893/
Download the Full Merged Peak List



Motif Analysis

Manual





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