DNA Damage Atlas

GSM2974253-WTZT0LIVER_rep2

Basic Information Genome Browser Distribution Quantification Visualization Motif Analysis


Basic Information

Manual

Sample ID:   

SRR6659144


Source Project ID:   

GSE109938

Cell Type:   

Liver


Organism:   

Mus musculus


Strain:   

C57BL/6


Treatment:   

Cisplatin


Treatment Dose:   

10 mg cisplatin/kg


Genotype:   

WT


Harvested Time:   

zeitgeber time: 0


Layout:   

SINGLE


Instrument model:   

illumina HiSeq 2500


Technique:   

XR-seq


Fastqc:  



Genome Browser

Manual

  link to genome browser visualization (rDNA locus is firstly shown for human and mouse samples)



Distribution

Manual




Genomic distribution Repeat distribution Top 10 simple repeats


Quantification

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Peak Intensity Top 10 Peaks
Chromosome Start End Summit Intensity Strand
chr91244388301244433621244401987.28389/
chr4_GL456216_random3007236649336556.77433/
chr54323154843236727432338586.63184/
chr21044920811044958241044944376.19389/
chr157624563276252126762478566.03819/
chr109541324295419100954168115.52112/
chr101396341513969241139658515.48595/
chr146275859262763276627604925.47914/
chr26012344860127385601251735.41613/
chr195566321557305055681715.32398/
Download the Full Peak List


Overlapped Peaks from Replicates




Average Peak Intensity Top 10 Merged Peaks
Chromosome Start End Summit Intensity Strand
chr4_GL456216_random3007236100336557.37547/
chr91244388371244433221244401987.36022/
chr54323164843236277432338587.35797/
chr26012373760126654601251737.11377/
chr155978346559785244597842726.91817/
chr158158438781588256815861286.80593/
chr157624608576251860762478566.69909/
chr127822515578228499782262326.49071/
chr191279418412797462127951176.47587/
chr31428808581428830581428817716.46161/
Download the Full Merged Peak List


Visualization

Manual



Motif Analysis

Manual





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