DNA Damage Atlas


GSM2974259-WTZT12LIVER_rep2




Basic Information

Manual

Sample ID:   

SRR6659150


Source Project ID:   

GSE109938

Cell Type:   

Liver


Organism:   

Mus musculus


Strain:   

C57BL/6


Treatment:   

Cisplatin


Treatment Dose:   

10 mg cisplatin/kg


Genotype:   

WT


Harvested Time:   

zeitgeber time: 12


Layout:   

SINGLE


Instrument model:   

illumina HiSeq 2500


Technique:   

XR-seq


Fastqc:  




Genome Browser

Manual

  link to genome browser visualization (rDNA locus is firstly shown for human and mouse samples)




Quantification

Manual

Peak Intensity Top 10 Peaks
Chromosome Start End Summit Intensity Strand
chr112123745221240923212393547.94885/
chr192313294123138170231351367.09348/
chrUn_JH5843045655263724597087.03792/
chr91244386201244433621244425096.68529/
chr131780247117806777178038096.61962/
chr181680568816810691168091866.56479/
chr21965633119660207196581956.55259/
chr131114880651114918241114893536.17325/
chr146275848362762939627602476.08925/
chr26012329160127390601251355.91751/
Download the Full Peak List



Overlapped Peaks from Replicates




Average Peak Intensity Top 10 Merged Peaks
Chromosome Start End Summit Intensity Strand
chrUn_JH58430458327622265970811.3525/
chr1121237818212405122123935410.0719/
chr27297796772981913729797179.35355/
chr91244417571244432751244425098.87713/
chr51437311461437332911437320148.58223/
chr21044924221044953021044940548.5332/
chr4_GL456216_random3275236009336678.48516/
chr46452156645486664538718.20884/
chr21965665719659653196581958.20281/
chr26012374060126583601251358.19437/
Download the Full Merged Peak List



Motif Analysis

Manual





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