DNA Damage Atlas

GSM2976715-ChIP-seq_siLuc_gH2AX_R1

Basic Information Genome Browser Distribution Quantification Visualization Motif Analysis


Basic Information

Manual

Sample ID:   

SRR6663702


Source Project ID:   

GSE110028

Cell Type:   

HeLa


Organism:   

Homo sapiens


Genotype:   

siLuc


Layout:   

PAIRED


Instrument model:   

Illumina HiSeq 4000


Technique:   

ChIP-seq (anti-γH2AX)


Others:   

control: GSM2976710-ChIP-seq _siLuc _Input _R1; GSM2976711-ChIP-seq _siLuc _Input _R2; GSM2976712-ChIP-seq _siLuc _Input _R3


Fastqc:  



Genome Browser

Manual

  link to genome browser visualization (rDNA locus is firstly shown for human and mouse samples)



Distribution

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Genomic distribution Repeat distribution Top 10 simple repeats


Quantification

Manual

Peak Intensity Top 10 Peaks
Chromosome Start End Summit Intensity Strand
rDNA40037992099455.07/
rDNA124001699914699445.873/
rDNA5400115998499300.373/
rDNA436004459944099222.53/
rDNA1840018799185999.29621/
chr81223240012232999122326997.44239/
rDNA2000020799203997.43202/
rDNA3380033999338997.17563/
chr51308200130839913082997.08812/
chr53721300037213199372130996.12554/
Download the Full Peak List


Overlapped Peaks from Replicates




Average Peak Intensity Top 10 Merged Peaks
Chromosome Start End Summit Intensity Strand
rDNA540089998499456.892/
rDNA40037992099455.07/
rDNA124001699914699445.873/
rDNA436004459944099222.53/
chr812232600122329991223269910.7801/
rDNA1840018799185999.29621/
rDNA3760039399390998.12139/
chr124647400464819946480997.9333/
rDNA2000020799203997.43202/
Download the Full Merged Peak List


Visualization

Manual



Motif Analysis

Manual





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