DNA Damage Atlas


GSM2976716-ChIP-seq_siLuc_gH2AX_R2




Basic Information

Manual

Sample ID:   

SRR6663703


Source Project ID:   

GSE110028

Cell Type:   

HeLa


Organism:   

Homo sapiens


Genotype:   

siLuc


Layout:   

PAIRED


Instrument model:   

Illumina HiSeq 4000


Technique:   

ChIP-seq (anti-γH2AX)


Others:   

control: GSM2976710-ChIP-seq _siLuc _Input _R1; GSM2976711-ChIP-seq _siLuc _Input _R2; GSM2976712-ChIP-seq _siLuc _Input _R3


Fastqc:  




Genome Browser

Manual

  link to genome browser visualization (rDNA locus is firstly shown for human and mouse samples)




Quantification

Manual

Peak Intensity Top 10 Peaks
Chromosome Start End Summit Intensity Strand
rDNA4003799209959.1975/
rDNA12400169991469952.6645/
rDNA54008999719946.9588/
chr812232600122329991223279920.2298/
rDNA43600445994409919.909/
rDNA18400187991859914.0154/
rDNA9800115991069912.258/
rDNA37600393993849911.3782/
chr592200092379992289910.7917/
chr53350003363993356999.97429/
Download the Full Peak List



Overlapped Peaks from Replicates




Average Peak Intensity Top 10 Merged Peaks
Chromosome Start End Summit Intensity Strand
rDNA4003799209959.1975/
rDNA12400169991469952.6645/
rDNA54008999719946.9588/
chr812232600122329991223279920.2298/
rDNA43600445994409919.909/
rDNA18400187991859914.0154/
rDNA9800115991069912.258/
rDNA37600393993849911.3782/
rDNA2000020799203998.51759/
rDNA3380033999338998.48342/
Download the Full Merged Peak List



Motif Analysis

Manual





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