DNA Damage Atlas

GSM2976716-ChIP-seq_siLuc_gH2AX_R2

Basic Information Genome Browser Distribution Quantification Visualization Motif Analysis


Basic Information

Manual

Sample ID:   

SRR6663703


Source Project ID:   

GSE110028

Cell Type:   

HeLa


Organism:   

Homo sapiens


Genotype:   

siLuc


Layout:   

PAIRED


Instrument model:   

Illumina HiSeq 4000


Technique:   

ChIP-seq (anti-γH2AX)


Others:   

control: GSM2976710-ChIP-seq _siLuc _Input _R1; GSM2976711-ChIP-seq _siLuc _Input _R2; GSM2976712-ChIP-seq _siLuc _Input _R3


Fastqc:  



Genome Browser

Manual

  link to genome browser visualization (rDNA locus is firstly shown for human and mouse samples)



Distribution

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Genomic distribution Repeat distribution Top 10 simple repeats


Quantification

Manual

Peak Intensity Top 10 Peaks
Chromosome Start End Summit Intensity Strand
rDNA4003799209959.1975/
rDNA12400169991469952.6645/
rDNA54008999719946.9588/
chr812232600122329991223279920.2298/
rDNA43600445994409919.909/
rDNA18400187991859914.0154/
rDNA9800115991069912.258/
rDNA37600393993849911.3782/
chr592200092379992289910.7917/
chr53350003363993356999.97429/
Download the Full Peak List


Overlapped Peaks from Replicates




Average Peak Intensity Top 10 Merged Peaks
Chromosome Start End Summit Intensity Strand
rDNA4003799209959.1975/
rDNA12400169991469952.6645/
rDNA54008999719946.9588/
chr812232600122329991223279920.2298/
rDNA43600445994409919.909/
rDNA18400187991859914.0154/
rDNA9800115991069912.258/
rDNA37600393993849911.3782/
rDNA2000020799203998.51759/
rDNA3380033999338998.48342/
Download the Full Merged Peak List


Visualization

Manual



Motif Analysis

Manual





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