DNA Damage Atlas

GSM2976722-ChIP-seq_siSpt6_gH2AX_R1

Basic Information Genome Browser Distribution Quantification Visualization Motif Analysis


Basic Information

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Sample ID:   

SRR6663709


Source Project ID:   

GSE110028

Cell Type:   

HeLa


Organism:   

Homo sapiens


Genotype:   

siSpt6


Layout:   

PAIRED


Instrument model:   

Illumina HiSeq 4000


Technique:   

ChIP-seq (anti-γH2AX)


Others:   

control: GSM2976717-ChIP-seq _siSpt6 _Input _R1; GSM2976718-ChIP-seq _siSpt6 _Input _R2; GSM2976719-ChIP-seq _siSpt6 _Input _R3


Fastqc:  



Genome Browser

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  link to genome browser visualization (rDNA locus is firstly shown for human and mouse samples)



Distribution

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Genomic distribution Repeat distribution Top 10 simple repeats


Quantification

Manual

Peak Intensity Top 10 Peaks
Chromosome Start End Summit Intensity Strand
rDNA40037992099463.014/
rDNA124001699914699440.349/
rDNA5400115998499317.551/
rDNA436004459944099217.096/
chr1311043340011044039911043689915.5868/
chr565720067819966769913.7648/
chr553060054879953969913.6536/
chr315012600015012899915012749912.7815/
chr510482001071399105979912.4557/
chr512000001235799121789911.8459/
Download the Full Peak List


Overlapped Peaks from Replicates




Average Peak Intensity Top 10 Merged Peaks
Chromosome Start End Summit Intensity Strand
rDNA540089998499467.161/
rDNA40037992099463.014/
rDNA124001699914699440.349/
rDNA436004459944099217.096/
rDNA37600393993909916.97/
chr592200092379992349916.317/
chr1311043340011044019911043689916.0325/
chr565720067819966769913.7648/
chr553060054879953969913.6536/
Download the Full Merged Peak List


Visualization

Manual



Motif Analysis

Manual





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