DNA Damage Atlas

GSM2976723-ChIP-seq_siSpt6_gH2AX_R2

Basic Information Genome Browser Distribution Quantification Visualization Motif Analysis


Basic Information

Manual

Sample ID:   

SRR6663710


Source Project ID:   

GSE110028

Cell Type:   

HeLa


Organism:   

Homo sapiens


Genotype:   

siSpt6


Layout:   

PAIRED


Instrument model:   

Illumina HiSeq 4000


Technique:   

ChIP-seq (anti-γH2AX)


Fastqc:  



Genome Browser

Manual

  link to genome browser visualization (rDNA locus is firstly shown for human and mouse samples)



Distribution

Manual




Genomic distribution Repeat distribution Top 10 simple repeats


Quantification

Manual

Peak Intensity Top 10 Peaks
Chromosome Start End Summit Intensity Strand
rDNA4003799209965.4289/
rDNA12400169991469956.4636/
rDNA54008999719950.803/
rDNA43600445994409919.4851/
rDNA10000115991079919.0772/
chr592200092379992289915.7464/
chr1936799800368011993680049915.3809/
chr529040029059929049914.2194/
chr533500033639933569914.1362/
chr553040054879953959914.068/
Download the Full Peak List


Overlapped Peaks from Replicates




Average Peak Intensity Top 10 Merged Peaks
Chromosome Start End Summit Intensity Strand
rDNA4003799209965.4289/
rDNA12400169991469956.4636/
rDNA54008999719950.803/
rDNA43600445994409919.4851/
rDNA10000115991079919.0772/
chr812232600122329991223269918.8598/
chr592200092379992289915.7464/
chr1936799800368011993680049915.3809/
chr529040029059929049914.2194/
chr553060054879953959914.214/
Download the Full Merged Peak List


Visualization

Manual



Motif Analysis

Manual





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