DNA Damage Atlas

GSM2983114-rnh201_rad1_rev3_W303_rep1

Basic Information Genome Browser Distribution Quantification Visualization Motif Analysis


Basic Information

Manual

Sample ID:   

SRR6678018


Source Project ID:   

GSE110241

Cell Type:   

whole yeast culture


Organism:   

Saccharomyces cerevisiae


Genotype:   

rnh201 rad1 rev3 W303


Layout:   

PAIRED


Instrument model:   

NextSeq 500


Technique:   

HydEn-seq


Fastqc:  



Genome Browser

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  link to genome browser visualization (rDNA locus is firstly shown for human and mouse samples)



Distribution

Manual




Genomic distribution Top 10 simple repeats


Quantification

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Peak Intensity Top 10 Peaks
Chromosome Start End Summit Intensity Strand
chrM5623465308597591997.78-
chrM775838458582555991.303-
chrXVI573276036385916.898+
chrII502074905701886.08+
chrV569300571134570450877.421-
chrM298013472432412870.6-
chrIII1133094863.198+
chrXI628526480963780836.602+
chrM721477704175066795.816-
chrXII487264185737739.603+
Download the Full Peak List


Overlapped Peaks from Replicates




Average Peak Intensity Top 10 Merged Peaks
Chromosome Start End Summit Intensity Strand
chrXI6290664801637801885.9+
chrX1962891978241972341750.12-
chrX7132537161717153411267.26-
chrXVI5821750563851111.57+
chrII5105746957011095.7+
chrV569350571131570450985.717-
chrVII528897530602529801926.243+
chrIII1127494921.705+
chrXII106412510657441065277913.738-
chrXII495363975737848.95+
Download the Full Merged Peak List


Visualization

Manual



Motif Analysis

Manual





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