DNA Damage Atlas

GSM2983123-rnh201_rad1_rev3_W303_rep2

Basic Information Genome Browser Distribution Quantification Visualization Motif Analysis


Basic Information

Manual

Sample ID:   

SRR6678027


Source Project ID:   

GSE110241

Cell Type:   

whole yeast culture


Organism:   

Saccharomyces cerevisiae


Genotype:   

rnh201 rad1 rev3 W303


Layout:   

PAIRED


Instrument model:   

NextSeq 500


Technique:   

HydEn-seq


Fastqc:  



Genome Browser

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  link to genome browser visualization (rDNA locus is firstly shown for human and mouse samples)



Distribution

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Genomic distribution Top 10 simple repeats


Quantification

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Peak Intensity Top 10 Peaks
Chromosome Start End Summit Intensity Strand
chrXI6289864813638962535.58+
chrM5437155347546111959.55+
chrM1206313268125111902.16+
chrM5620365173597591898.9-
chrX1962351979771971671771.85-
chrM8134583033825551568.03-
chrX7132337162327153411555.04-
chrVII1083320108505210844891290.72-
chrII5047749557011185.11+
chrXVI5776750563801168.58+
Download the Full Peak List


Overlapped Peaks from Replicates




Average Peak Intensity Top 10 Merged Peaks
Chromosome Start End Summit Intensity Strand
chrXI6290664801638961885.9+
chrX1962891978241971671750.12-
chrX7132537161717153411267.26-
chrXVI5821750563801111.57+
chrII5105746957011095.7+
chrV569350571131570450985.717-
chrVII528897530602529801926.243+
chrIII1127432921.705+
chrXII106412510657441065030913.738-
chrXII495363975737848.95+
Download the Full Merged Peak List


Visualization

Manual



Motif Analysis

Manual





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