DNA Damage Atlas

GSM2983127-rnh201_rad1_rev3_L03_rep3

Basic Information Genome Browser Distribution Quantification Visualization Motif Analysis


Basic Information

Manual

Sample ID:   

SRR6678031


Source Project ID:   

GSE110241

Cell Type:   

whole yeast culture


Organism:   

Saccharomyces cerevisiae


Genotype:   

rnh201 rad1 rev3 L03


Layout:   

PAIRED


Instrument model:   

NextSeq 500


Technique:   

HydEn-seq


Fastqc:  



Genome Browser

Manual

  link to genome browser visualization (rDNA locus is firstly shown for human and mouse samples)



Distribution

Manual




Genomic distribution Top 10 simple repeats


Quantification

Manual

Peak Intensity Top 10 Peaks
Chromosome Start End Summit Intensity Strand
chrXI6293664795639431478.07+
chrXV114673116081115361869.075-
chrXVI590175056360864.886+
chrX713254716154715341762.293-
chrV569359571092570450743.005-
chrII513274985849724.022+
chrVII528890530627529801693.163+
chrX196363197665197226682.657-
chrXV108373110853091084687668.55-
chrIV384475385871385151606.746-
Download the Full Peak List


Overlapped Peaks from Replicates




Average Peak Intensity Top 10 Merged Peaks
Chromosome Start End Summit Intensity Strand
chrXI6293664761639431408.38+
chrX7143367161227153411060.43-
chrXVI590175046360968.918+
chrXV114673116066115361914.117-
chrV569359571092570450849.504-
chrII513274875849817.051+
chrVII528890530627529801768.7+
chrXV108373110853051084687720.662-
chrXII106410010657921065277720.422-
chrX196363197665197226715.142-
Download the Full Merged Peak List


Visualization

Manual



Motif Analysis

Manual





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