DNA Damage Atlas


GSM3004376-CPD_XR-seq_20M_rep1




Basic Information

Manual

Sample ID:   

SRR6726727


Source Project ID:   

GSE110621

Organism:   

Saccharomyces cerevisiae


Strain:   

MATalpha, ura3-52, his3-1, leu2-3, leu2-112, cir0


Treatment:   

UV (254 nm)


Treatment Dose:   

120J/m2


Genotype:   

WT


Harvested Time:   

repair incubation time: 20 mins


Layout:   

SINGLE


Instrument model:   

illumina HiSeq 2500


Technique:   

XR-seq


Others:   

antibody: anti-CPD


Fastqc:  




Genome Browser

Manual

  link to genome browser visualization (rDNA locus is firstly shown for human and mouse samples)




Quantification

Manual

Peak Intensity Top 10 Peaks
Chromosome Start End Summit Intensity Strand
chrXII459603460752460404584.796/
chrXI111151112439111920144.118/
chrVI236205238083237027142.023/
chrX346016347560347114141.88/
chrIV118591311884821186799140.616/
chrXII749290752236750970140.496/
chrV212775213957213347139.222/
chrXV156461157611157016138.516/
chrXIV453855455031454327138.365/
chrIX877548878588303137.139/
Download the Full Peak List



Overlapped Peaks from Replicates




Average Peak Intensity Top 10 Merged Peaks
Chromosome Start End Summit Intensity Strand
chrXII459603460752460404584.796/
chrX346185347545347114149.072/
chrIV118591311881191186799146.687/
chrXI111151112439111920144.118/
chrV499263500294500224142.501/
chrVI236205238083237027142.023/
chrV541698543024542349141.973/
chrXII749301752132750970141.46/
chrXV156491157611157016139.641/
chrV212775213957213347139.222/
Download the Full Merged Peak List



Motif Analysis

Manual





Copyright © 2023 All Rights Reserved by Wu lab