DNA Damage Atlas

GSM3057952-B6N_ChIP_replicate_1

Basic Information Genome Browser Distribution Quantification Visualization Motif Analysis


Basic Information

Manual

Sample ID:   

SRR6871334 , SRR6871335


Source Project ID:   

GSE112110

Cell Type:   

Testis


Organism:   

Mus musculus


Strain:   

C57BL/6N


Genotype:   

WT


Layout:   

PAIRED


Instrument model:   

Illumina HiSeq 2500


Technique:   

ChIP-seq (anti-DMC1)


Fastqc:  



Genome Browser

Manual

  link to genome browser visualization (rDNA locus is firstly shown for human and mouse samples)



Distribution

Manual




Genomic distribution Repeat distribution Top 10 simple repeats


Quantification

Manual

Peak Intensity Top 10 Peaks
Chromosome Start End Summit Intensity Strand
chr1189611836896126128961186012.787-
chrX64876085648767836487653012.439+
chrX10255377710255424810255383111.8504+
chrX73017976730186837301863011.4034+
chr1170609534706100397060977811.0525+
chr1067978050679787686797823311.0128+
chrX80145078016151801504710.9397+
chr395945611959461539594600610.8701-
chrX58931215893409589327910.7668-
chrX51889897518911555189046310.7223+
Download the Full Peak List


Overlapped Peaks from Replicates




Average Peak Intensity Top 10 Merged Peaks
Chromosome Start End Summit Intensity Strand
chr1189611836896126128961186012.787-
chrX80145078015901801504712.4568+
chrX64876085648767836487653012.439+
chrX10255377710255424810255383111.8504+
chr514483934614484008714483958811.7171-
chrX73017976730186837301863011.4034+
chr1170609534706100397060977811.0525+
chr395945611959461539594600610.8701-
chrX51889897518911555189046310.7223+
chr1527819277278198412781968510.721+
Download the Full Merged Peak List


Visualization

Manual



Motif Analysis

Manual





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