DNA Damage Atlas

GSM3057953-B6N_ChIP_replicate_2

Basic Information Genome Browser Distribution Quantification Visualization Motif Analysis


Basic Information

Manual

Sample ID:   

SRR6871336 , SRR6871337


Source Project ID:   

GSE112110

Cell Type:   

Testis


Organism:   

Mus musculus


Strain:   

C57BL/6N


Genotype:   

WT


Layout:   

PAIRED


Instrument model:   

Illumina HiSeq 2500


Technique:   

ChIP-seq (anti-DMC1)


Others:   

control: GSM3057960-B6N_input_replicate_2


Fastqc:  



Genome Browser

Manual

  link to genome browser visualization (rDNA locus is firstly shown for human and mouse samples)



Distribution

Manual




Genomic distribution Repeat distribution Top 10 simple repeats


Quantification

Manual

Peak Intensity Top 10 Peaks
Chromosome Start End Summit Intensity Strand
chrX42260392422633374226197212.6138-
chrX78487094784893067848833112.5953-
chr118808393718808495918808418212.3323+
chrX42214513422171534221595712.3122+
chr1183585244835871698358590412.0609+
chrX51889081518917545189046311.912+
chr398136592981387159813743411.561+
chr1189609939896130048961186011.2542-
chrX80137528016608801504711.1487+
chr453524262535258265352494011.0276-
Download the Full Peak List


Overlapped Peaks from Replicates




Average Peak Intensity Top 10 Merged Peaks
Chromosome Start End Summit Intensity Strand
chr523858024238583552385813426.053+
chrX60347874603481836034810725.7612-
chr514483934614484008714483958824.1707-
chrX16653619116653690516653642224.1556-
chrX51889897518911555189046322.1468+
chr1170609534706100397060977821.6738+
chrX93903984939042619390402621.5529-
chr1189611836896126128961186020.516-
chrX10255377710255424810255383119.7174+
chrX80145078015901801504719.5103+
Download the Full Merged Peak List


Visualization

Manual



Motif Analysis

Manual





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