DNA Damage Atlas

GSM3057954-B6N_ChIP_replicate_3

Basic Information Genome Browser Distribution Quantification Visualization Motif Analysis


Basic Information

Manual

Sample ID:   

SRR6871338


Source Project ID:   

GSE112110

Cell Type:   

Testis


Organism:   

Mus musculus


Strain:   

C57BL/6N


Genotype:   

WT


Layout:   

PAIRED


Instrument model:   

Illumina HiSeq 2500


Technique:   

ChIP-seq (anti-DMC1)


Others:   

control: GSM3057961-B6N_input_replicate_3


Fastqc:  



Genome Browser

Manual

  link to genome browser visualization (rDNA locus is firstly shown for human and mouse samples)



Distribution

Manual




Genomic distribution Repeat distribution Top 10 simple repeats


Quantification

Manual

Peak Intensity Top 10 Peaks
Chromosome Start End Summit Intensity Strand
chr514483934614484008714483958866.5037-
chr1067978014679788206797823365.2165+
chrX78487308784890127848833162.6595-
chrX11731284111731329511731297761.5086-
chrX42214957422174904221595757.0677+
chr398136747981384779813743456.9702+
chrX13502677413502824713502742455.7584+
chrX10124476310124535710124514655.3078+
chrX80141698015901801504755.0076+
chrX10271087910271195710271126853.3325-
Download the Full Peak List


Overlapped Peaks from Replicates




Average Peak Intensity Top 10 Merged Peaks
Chromosome Start End Summit Intensity Strand
chrX60347874603481836034810785.0559-
chrX42215622422171534221595778.8597+
chrX51889897518911555189046373.1224+
chrX16653619116653690516653642272.4695-
chr398136797981378289813743470.8997+
chrX73017976730186837301863070.8636+
chr523858024238583552385813469.4773+
chrX11731288711731329511731297768.4434-
chr1189611836896126128961186066.6794-
chr514483934614484008714483958866.5037-
Download the Full Merged Peak List


Visualization

Manual



Motif Analysis

Manual





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