DNA Damage Atlas

GSM3057955-Stag3_mutant_ChIP_replicate_1

Basic Information Genome Browser Distribution Quantification Visualization Motif Analysis


Basic Information

Manual

Sample ID:   

SRR6871339 , SRR6871340


Source Project ID:   

GSE112110

Cell Type:   

Testis


Organism:   

Mus musculus


Strain:   

C57BL/6N


Genotype:   

Stag3-/-


Layout:   

PAIRED


Instrument model:   

Illumina HiSeq 2500


Technique:   

ChIP-seq (anti-DMC1)


Fastqc:  



Genome Browser

Manual

  link to genome browser visualization (rDNA locus is firstly shown for human and mouse samples)



Distribution

Manual




Genomic distribution Repeat distribution Top 10 simple repeats


Quantification

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Peak Intensity Top 10 Peaks
Chromosome Start End Summit Intensity Strand
chr415196711615197159915196970325.6151+
chr1189609594896136468961186020.174-
chr911509845211510217311510011620.1379+
chr310761470610761880610761681120.0565+
chr413944899113945277813945102218.8875-
chr413936350513936709813936535418.4177+
chr117212650517213081517212902216.9343+
chr911063185911063572211063363516.6265-
chr910769219910769800310769387316.1801+
chr1311855671111856033011855834416.1341-
Download the Full Peak List


Overlapped Peaks from Replicates




Average Peak Intensity Top 10 Merged Peaks
Chromosome Start End Summit Intensity Strand
chr1067978052679788796797823330.8892+
chr415196779915197159915196970329.8349+
chr1311855722811855874711855834427.8685-
chr812926953512927061712927013327.6567+
chr812926353112926511212926436627.3912+
chr116815854816815936916815882225.7809+
chr614059018414059283314059155424.8891-
chr310761546110761848610761681124.7712+
chr1189610307896135348961186024.5777-
chr910769239410769478710769387323.9934+
Download the Full Merged Peak List


Visualization

Manual



Motif Analysis

Manual





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