DNA Damage Atlas

GSM3057957-Rec8_mutant_ChIP_replicate_1

Basic Information Genome Browser Distribution Quantification Visualization Motif Analysis


Basic Information

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Sample ID:   

SRR6871343


Source Project ID:   

GSE112110

Cell Type:   

Testis


Organism:   

Mus musculus


Strain:   

C57BL/6N


Genotype:   

Rec8-/-


Layout:   

PAIRED


Instrument model:   

Illumina HiSeq 2500


Technique:   

ChIP-seq (anti-DMC1)


Others:   

control: GSM3057962-Rec8_mutant_input_replicate_1


Fastqc:  



Genome Browser

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  link to genome browser visualization (rDNA locus is firstly shown for human and mouse samples)



Distribution

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Genomic distribution Repeat distribution Top 10 simple repeats


Quantification

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Peak Intensity Top 10 Peaks
Chromosome Start End Summit Intensity Strand
chr474225934742268097422645896.1695+
chr398136767981378369813743492.7734+
chr614059018414059296614059155489.6619-
chr1269374970693753406937532789.3466-
chr1280467746804679488046789589.2662-
chr514483883114484019814483958886.8392-
chr1189610328896133938961186085.3053-
chr259413502594139695941372283.6592+
chr395945577959463599594600680.7049-
chr843003414300528430042480.3555+
Download the Full Peak List


Overlapped Peaks from Replicates




Average Peak Intensity Top 10 Merged Peaks
Chromosome Start End Summit Intensity Strand
chr474225934742268097422645896.1695+
chr398136767981378369813743492.7734+
chr614059018414059287914059155491.9988-
chr1189610567896133938961186091.4563-
chr1269374970693753406937532789.3466-
chr514483883114484019814483958886.8392-
chr259413502594139695941372283.6592+
chr395945577959463599594600680.7049-
chr843003414300528430042480.3555+
chr1311855787111855865711855834480.2942-
Download the Full Merged Peak List


Visualization

Manual



Motif Analysis

Manual





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