DNA Damage Atlas

GSM3057958-Rec8_mutant_ChIP_replicate_2

Basic Information Genome Browser Distribution Quantification Visualization Motif Analysis


Basic Information

Manual

Sample ID:   

SRR6871344


Source Project ID:   

GSE112110

Cell Type:   

Testis


Organism:   

Mus musculus


Strain:   

C57BL/6N


Genotype:   

Rec8-/-


Layout:   

PAIRED


Instrument model:   

Illumina HiSeq 2500


Technique:   

ChIP-seq (anti-DMC1)


Others:   

control: GSM3057963-Rec8_mutant_input_replicate_2


Fastqc:  



Genome Browser

Manual

  link to genome browser visualization (rDNA locus is firstly shown for human and mouse samples)



Distribution

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Genomic distribution Repeat distribution Top 10 simple repeats


Quantification

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Peak Intensity Top 10 Peaks
Chromosome Start End Summit Intensity Strand
chr1189610567896134918961186036.2587-
chrX42214859422171534221595735.5991+
chr298107009981095069810837434.4263+
chr614058969114059287914059155434.1549-
chr1249727894975698497428332.5056+
chr1234594009345963533459524531.1724+
chr1756055614560576405605612831.1151+
chr414497803414498039914497881130.8956+
chr1717652305176551751765363130.4513-
chr911509915411510099711510011630.3177+
Download the Full Peak List


Overlapped Peaks from Replicates




Average Peak Intensity Top 10 Merged Peaks
Chromosome Start End Summit Intensity Strand
chr789901013899013268990131764.0827+
chr398136767981378369813743453.6092+
chr213127925131282511312799152.7377-
chr510857208910857253110857247251.8627-
chr1717653550176548121765363150.5194-
chr1269374970693753406937532750.3383-
chr314808334614808364714808345747.5982+
chr1111366665911366732511366704447.3267+
chr935013204350136623501340346.9227+
chr553707845371548537084046.8818-
Download the Full Merged Peak List


Visualization

Manual



Motif Analysis

Manual





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